When you download them, each comes as a small executable. I tend to leave the PuTTY executable in the directory I downloaded it to and create a shortcut to it on the desktop. Whenever I want to use it, I just double-click the shortcut. I like to put the PSCP executable someplace in the computer's path. Then to use it, I just open an MS-DOS terminal, change to the directory I want to copy to and copy files over with the command:
pscp remote-linux-box-address:path-to-files .There's documentation on how to use PuTTY and PSCP here. For PSCP you can also look at the man pages for scp since the usage is the same.
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